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Commits on Aug 31, 2016

• Fix Calc centroid and center of mass documentation

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Commits on Aug 30, 2016

• Merge branch 'master' into quatalign

  lafita

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Commits on Aug 23, 2016

• Merge pull request #555 from andreasprlic/master

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  sbliven

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Commits on Aug 21, 2016

• SymmetryTools.getResetVal: Do not compare NaNs with ==, use

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Commits on Aug 19, 2016

• Addressing @josemduarte 's comment to change log level for method.

  andreasprlic

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

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• making output less verbose

  andreasprlic

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• making output less verbose

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• making output less verbose

  andreasprlic

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• making output less verbose

  andreasprlic

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• Deprecating methods that got used to the Chain interface.

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• moving utility classes to detect type of Chain to the Chain interface level (used to be StructureTools).

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Commits on Aug 17, 2016

• adding check for lPeptideLinking to isPolymeric

  andreasprlic

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• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

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• Making recent MmtfActions.writeToOutputStream static

  sbliven

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Commits on Aug 16, 2016

• Fix the doc

  abradle

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• Update the outputstream to be created outside the function

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• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

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• Write MMTF to an OutputStream

  abradle

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• Fixed the logic of working out which type of group a group is.

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  abradle

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Commits on Aug 15, 2016

• Merge branch 'master' of github.com:biojava/biojava

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• Fixed handling of entities with no chains

  abradle

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• Fixed a null pointer exception from getAtomFromRecord

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• Added handling of different residue types.

  abradle

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• Fixed a bug in generation of disulphide bonds - including a test case.

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Commits on Aug 12, 2016

• Added support for D-GAMMA-PEPTIDE being a heatatm (as with mmCIF) not an amino.

  abradle

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Commits on Aug 11, 2016

• Minor javadoc & warnings fixes

  sbliven

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• Merge pull request #556 from sbliven/master

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  sbliven

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• Using the new checks for polymer type in Group, instead of similar checks in StructureTools.

  andreasprlic

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Commits on Aug 10, 2016

• Fix compilation errors from merge

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  sbliven

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• Merge branch 'bugfixes-4.2'

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Commits on Aug 9, 2016

• Fixed bug where bonds from struct conn records were not made for multiple models.

  abradle

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• Latest ECOD now contains string quotes around some data fields. Need to remove them for junit tests to parse.

  andreasprlic

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• update test for type of group based on comments from @josemduarte

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Commits on Aug 8, 2016

• Revert "Improve documentation of UnitQuaternions.relativeOrientation"

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  andreasprlic

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