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biojava
biojava-structure
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Commits on Aug 28, 2026
Merge branch 'master' into jd/asa-perf
josemduarte
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Commits on Aug 27, 2026
Merge pull request #1145 from biojava/jd/cath-fixes
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Test fix suggested by AI: test was failing when download was too slow
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Commits on Aug 26, 2026
Safeguard for case of nothing parseable in file
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Write the entry identifier as a data item, not only as the block name
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Merge upstream master into aa/ecod-new-format
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Use parallel primitive arrays for neighbors in AsaCalculator
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Commits on Aug 17, 2026
Test every ECOD layout offline
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Commits on Aug 16, 2026
Test that a redirect or error is never cached as a chem comp definition
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Commits on Dec 14, 2025
Refactor: fix SonarQube S1155 issues (#1079)
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Commits on Jan 7, 2025
Javadoc fix: remaining errors in structure module. Mostly obsolete references
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Commits on Jan 3, 2025
Use official url instead of github
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Commits on Aug 30, 2024
Fix test result.
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Add test for rcsb/symmetry#118
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Commits on Jul 20, 2024
Obsolete test: mmtf.rcsb.org was discontinued
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Commits on Apr 8, 2024
Fixing test
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Commits on Mar 6, 2024
Merge pull request #1085 from josemduarte/miscfixes
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Commits on Mar 4, 2024
Replacing home-made copy by Files.copy. Other minor fixes
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Adding test case
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Commits on Jan 5, 2024
Updating test
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Commits on May 12, 2023
Fixing empty seqres groups for cif files with no _entity
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Fixing empty seqres groups for pdb files with not seqres
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Commits on May 11, 2023
Handling nulls in descriptions
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New test
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Commits on Apr 3, 2023
Fixing test after PDB id obsoletion
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Commits on Jan 30, 2023
More nullpdbid tests (#1056)
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Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure
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Commits on Nov 18, 2022
vuln-fix: Temporary File Information Disclosure
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Commits on Oct 26, 2022
Switching to new DNS name for wwpdb http file server
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Commits on Jun 20, 2022
update assembly file test to new location
sbittrich
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Commits on Nov 24, 2021
Removing empy test
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Commits on Oct 30, 2021
Avoiding test that fails often in github workflow
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Commits on Oct 29, 2021
Support extended pdbid (#950)
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Commits on Oct 12, 2021
Adding test
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Commits on Oct 1, 2021
Docs and test
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