Commits

History for

Commits on Aug 27, 2026

Logging for resolution parsing: warn only when they are actually different
josemduarte
committed
d6a9604
Logging cosmetics
josemduarte
committed
8af5253
Merge pull request #1145 from biojava/jd/cath-fixes
josemduarte
authored
7085ddb
Test fix suggested by AI: test was failing when download was too slow
josemduarte
committed
954d75a
Demoting
josemduarte
committed
26c03d1

Commits on Aug 26, 2026

Logging
josemduarte
committed
27bb418
Safeguard for case of nothing parseable in file
josemduarte
committed
83fe61a
Write the entry identifier as a data item, not only as the block name
aalhossary
committed
e0b7797
Merge branch 'master' into jd/cath-fixes
josemduarte
committed
4b4e91f
Merge upstream master into aa/ecod-new-format
aalhossary
committed
cbab39b
Fix ArrayIndexOutOfBoundsException and file validation in CathInstallation
josemduarte
committed
72b5ed1

Commits on Aug 17, 2026

Test every ECOD layout offline
aalhossary
committed
2ad8e09
Support the new ECOD distribution format
aalhossary
committed
6cb9633

Commits on Aug 16, 2026

Test that a redirect or error is never cached as a chem comp definition
aalhossary
committed
5d07241

Commits on Aug 15, 2026

Commits on Jul 29, 2026

Bugfix: parsing of mmCIF files with empty database_PDB_rev.date
josemduarte
committed
cb3019d

Commits on May 5, 2026

Adding safeguard, bug introduced in #1116 and reported in Biojava-l
josemduarte
committed
7c3909f

Commits on Dec 14, 2025

Refactor: fix SonarQube S1155 issues (#1079)
Pasjonat90D
committed
c0240dd

Commits on Dec 10, 2025

Merge pull request #1120 from biojava/sym-edgecase
josemduarte
authored
8edaed7

Commits on Dec 8, 2025

Commits on Nov 30, 2025

Fix #1079: Use isEmpty() instead of size() == 0
Pasjonat90D
committed
3f039fd

Commits on Nov 21, 2025

Fix RSPEC-1940 boolean checks
JayKamsu
committed
0af196f

Commits on Nov 8, 2025

Fix for #1116
josemduarte
committed
274a36a

Commits on Mar 19, 2025

Safeguards
josemduarte
committed
7217ee8
More cleanup
josemduarte
committed
c33627f
More cleanup
josemduarte
committed
743a9fd
Formatting and docs cleanup
josemduarte
committed
381fedd

Commits on Mar 18, 2025

Update biojava-structure/src/main/java/org/biojava/nbio/structure/EntityType.java

josemduarte
and
sbittrich
authored
aa0d576

Commits on Mar 17, 2025

Make entity type case insensitive. Also improved docs
josemduarte
committed
501a09e

Commits on Mar 4, 2025

Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java

josemduarte
and
sbittrich
authored
48cb462

Commits on Feb 28, 2025

Deal with missing strand_id
josemduarte
committed
2841770