Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
JavaMuller
/
biojava
Public
forked from
biojava/biojava
Notifications
You must be signed in to change notification settings
Fork
0
Star
0
Code
Pull requests
0
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Pull requests
Actions
Projects
Security and quality
Insights
Commits
Breadcrumbs
History for
biojava
biojava-structure
on
bugfixes-4.2
User selector
All users
Datepicker
All time
Commit history
Commits on Feb 18, 2017
[maven-release-plugin]prepare for next development iteration
Jenkins
committed
2888f8f
View commit details
Copy full SHA for 2888f8f
View code at this point
Browse repository at this point
[maven-release-plugin]prepare release biojava-4.2.6
Jenkins
committed
6624619
View commit details
Copy full SHA for 6624619
View code at this point
Browse repository at this point
Catching empty coordinates earlier in quat sym detection
josemduarte
committed
0f322ee
View commit details
Copy full SHA for 0f322ee
View code at this point
Browse repository at this point
Commits on Feb 15, 2017
Fix Quaternary symmetry symmetry detection bug
Show description for ac19532
sbliven
committed
ac19532
View commit details
Copy full SHA for ac19532
View code at this point
Browse repository at this point
Commits on Feb 10, 2017
Better rules for Quaternary symm self-alignments
Show description for 89ac11a
sbliven
committed
89ac11a
View commit details
Copy full SHA for 89ac11a
View code at this point
Browse repository at this point
Commits on Jan 21, 2017
Now catching empty arrays in getCentroid
josemduarte
committed
feb9852
View commit details
Copy full SHA for feb9852
View code at this point
Browse repository at this point
Less verbose logging in AsaCalculator
josemduarte
committed
c11c0d2
View commit details
Copy full SHA for c11c0d2
View code at this point
Browse repository at this point
Better logging in symmetry package
josemduarte
committed
7f8659a
View commit details
Copy full SHA for 7f8659a
View code at this point
Browse repository at this point
Fix for #631
josemduarte
committed
afd6fcb
View commit details
Copy full SHA for afd6fcb
View code at this point
Browse repository at this point
Commits on Dec 7, 2016
[maven-release-plugin]prepare for next development iteration
Jenkins
committed
2a6ff38
View commit details
Copy full SHA for 2a6ff38
View code at this point
Browse repository at this point
[maven-release-plugin]prepare release biojava-4.2.5
Jenkins
committed
4db2832
View commit details
Copy full SHA for 4db2832
View code at this point
Browse repository at this point
Commits on Nov 23, 2016
Adding non-standard sg check to pdb parser
josemduarte
committed
2d4a720
View commit details
Copy full SHA for 2d4a720
View code at this point
Browse repository at this point
Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.
josemduarte
committed
a2f900c
View commit details
Copy full SHA for a2f900c
View code at this point
Browse repository at this point
Now using the new fields from CrystalBuilder
josemduarte
committed
cfd6f4a
View commit details
Copy full SHA for cfd6f4a
View code at this point
Browse repository at this point
Commits on Nov 22, 2016
Some extra rare fields in atom_sites
josemduarte
committed
1dbfcbd
View commit details
Copy full SHA for 1dbfcbd
View code at this point
Browse repository at this point
Fixing npe introduced in last commit
josemduarte
committed
b824612
View commit details
Copy full SHA for b824612
View code at this point
Browse repository at this point
Implementing new crystallographic metadata fields.
josemduarte
committed
508e770
View commit details
Copy full SHA for 508e770
View code at this point
Browse repository at this point
Implementing parsing of atom_sites category in mmcif parser/consumer
josemduarte
committed
ad79f0e
View commit details
Copy full SHA for ad79f0e
View code at this point
Browse repository at this point
Commits on Sep 21, 2016
Inserts space when altLoc is null, so that the rest of fields are properly aligned.
altaite
authored and
josemduarte
committed
6aa44f8
View commit details
Copy full SHA for 6aa44f8
View code at this point
Browse repository at this point
FileConvert fix - added empty space if altLoc is null.
altaite
authored and
josemduarte
committed
48708c3
View commit details
Copy full SHA for 48708c3
View code at this point
Browse repository at this point
Commits on Aug 1, 2016
Fixing cath urls according to their final layout
josemduarte
committed
af526f1
View commit details
Copy full SHA for af526f1
View code at this point
Browse repository at this point
Commits on Jul 29, 2016
[maven-release-plugin]prepare for next development iteration
Jenkins
committed
e2cc068
View commit details
Copy full SHA for e2cc068
View code at this point
Browse repository at this point
[maven-release-plugin]prepare release biojava-4.2.4
Jenkins
committed
79f57d7
View commit details
Copy full SHA for 79f57d7
View code at this point
Browse repository at this point
Complete new CATH file names #546 and #544
Show description for 3bc719a
lafita
authored and
josemduarte
committed
3bc719a
View commit details
Copy full SHA for 3bc719a
View code at this point
Browse repository at this point
Commits on Jul 28, 2016
Fixing #544 and improving logging
josemduarte
committed
a9db148
View commit details
Copy full SHA for a9db148
View code at this point
Browse repository at this point
Some work towards fixing #544
josemduarte
committed
7453eee
View commit details
Copy full SHA for 7453eee
View code at this point
Browse repository at this point
Back-porting cloning fix (see #541) into bugfixes-4.2
josemduarte
committed
46b30b3
View commit details
Copy full SHA for 46b30b3
View code at this point
Browse repository at this point
#542 changing default SCOP download location to Berkeley- SCOP.
andreasprlic
authored and
josemduarte
committed
234d0da
View commit details
Copy full SHA for 234d0da
View code at this point
Browse repository at this point
Commits on Jul 13, 2016
Fixing #533
josemduarte
committed
2785fdf
View commit details
Copy full SHA for 2785fdf
View code at this point
Browse repository at this point
Commits on Jul 1, 2016
#505 switching to https for all NCBI utils traffic.
andreasprlic
committed
ebc2c97
View commit details
Copy full SHA for ebc2c97
View code at this point
Browse repository at this point
Commits on Jun 28, 2016
[maven-release-plugin]prepare for next development iteration
Jenkins
committed
2b03990
View commit details
Copy full SHA for 2b03990
View code at this point
Browse repository at this point
[maven-release-plugin]prepare release biojava-4.2.3
Jenkins
committed
c7f77f8
View commit details
Copy full SHA for c7f77f8
View code at this point
Browse repository at this point
[maven-release-plugin] rollback the release of biojava-4.2.3
Jenkins
committed
1b85d10
View commit details
Copy full SHA for 1b85d10
View code at this point
Browse repository at this point
[maven-release-plugin]prepare release biojava-4.2.3
Jenkins
committed
301b232
View commit details
Copy full SHA for 301b232
View code at this point
Browse repository at this point
Commits on Jun 24, 2016
[maven-release-plugin] rollback the release of biojava-4.2.3
Jenkins
committed
f0daa42
View commit details
Copy full SHA for f0daa42
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.