Commits

History for

Commits on Aug 14, 2015

Merging from master to biojava-ffx integration branch.
jacob-litman
committed
3fc00be

Commits on Aug 4, 2015

Use C-alpha Atoms in AltLocs Test
lafita
committed
f2c25d5

Commits on Jul 31, 2015

#308 adding a test that demonstrates that fetching mmCIF files from remote URLs is broken. Also tests for correct parsing of compressed files.
andreasprlic
committed
66cfcdc

Commits on Jul 29, 2015

Extended the interface-implementation paradigm to Bonds and SSBonds. Renamed chain.getParent() and chain.setParent() to chain.getStructure() and chain.setStructure() to deconflict with other APIs. …
Jacob Litman
committed
ffdc278

Commits on Jul 27, 2015

Adding some more non-deposited files tests, #305.
josemduarte
committed
782e2f7

Commits on Jul 24, 2015

Commits on Jul 23, 2015

Commits on Jul 22, 2015

Calc.transform() documentation and testing
lafita
committed
fdb5cb0

Commits on Jul 20, 2015

Fix bug in jama to vecmath conversion
lafita
committed
8f2ef09

Commits on Jul 16, 2015

Organize MultipleAlignment code in a util package
lafita
committed
488d071
Test all String output Writer methods of MultipleAlignment
lafita
committed
ed95b34

Commits on Jul 8, 2015

Create test for XML conversion and parsing of MultipleAlignments
lafita
committed
9d610a9

Commits on Jul 1, 2015

Create Multiple Alignment GUI
lafita
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2fa9ca2

Commits on Jun 26, 2015

Merge pull request #290 from lafita/multaln
sbliven
committed
46ea99d
Undo CLI changes for Multiple Structure Alignment
lafita
committed
179be76

Commits on Jun 25, 2015

Support flexible alignments in the MC optimization
lafita
committed
6cc075a
Fixing #289
josemduarte
committed
15f3cd8

Commits on Jun 23, 2015

Set AFPChain constructor algorithm name to unknown
lafita
committed
2850758
Fix updateSuperposition() bug with Transformation Matrices
lafita
committed
01a8db4

Commits on Jun 22, 2015

Create Test templates for MultipleAlignment
lafita
committed
dffd286

Commits on Jun 16, 2015

Commits on Jun 9, 2015

Adding Structure.toMMCIF, #188
josemduarte
committed
9866143
Finally fixing #234.
josemduarte
committed
903891e
Major change of the mmcif parser: now it copes with comments and empty
josemduarte
committed
b6209c2

Commits on Jun 8, 2015

Commits on Jun 6, 2015

Now actually testing something, test doesn't pass yet
josemduarte
committed
b7aa1ba